Database v0.1 Notions and notation About this project AlgebraicPhylogenetics.jl documentation in Small Phylogenetic Trees (2007)
The algebraic phylogenetics database
specifying algebraic invariants of small trees and networks in phylogenetics

This is database version 0.1 of January 18, 2025.

Tree graph or network Phylogenetic model Dimension Degree number of
probability
coordinates
number of
Fourier
coordinates
Dimension
Singular
Locus
Degree
Singular
Locus
MLdeg EDdeg
Cavender Felsenstein Neyman 4 1 4 4 - - 1 1
Jukes Cantor 4 3 5 5 2 3 23 13
Kimura 2-parameter 7 12 10 10 4 22 1964 184
Kimura 3-parameter 10 96 16 16 - - - 12673
Cavender Felsenstein Neyman 5 8 8 8 2 24 92 92
Jukes Cantor 5 20 15 12 - - 4315 124
Kimura 2-parameter 9 832 36 33 - - - 50972
Kimura 3-parameter 13 70784 64 64 - - - -
Cavender Felsenstein Neyman 6 4 8 8 3 4 14 10
Jukes Cantor 6 34 15 13 - - 17332 290
Kimura 2-parameter 11 2536 36 34 - - - -
Kimura 3-parameter 16 689920 64 64 - - - -
Cavender Felsenstein Neyman 6 52 16 16 - - 4698 858
Jukes Cantor 6 115 51 27 - - - 713
Kimura 2-parameter 11 - 136 106 - - - -
Kimura 3-parameter 16 - 256 256 - - - -
Cavender Felsenstein Neyman 7 44 16 16 - - 2098 334
Jukes Cantor 7 315 51 31 - - - 3819
Kimura 2-parameter - - 136 112 - - - -
Kimura 3-parameter - - 256 256 - - - -
Cavender Felsenstein Neyman 8 34 16 16 - - 668 144
Jukes Cantor 8 813 51 34 - - - 10073
Kimura 2-parameter - - 136 116 - - - -
Kimura 3-parameter - - 256 256 - - - -